## Input files¶

The python scripts used in this tutorial are here and the input files are here.

Two *.dat files contain the structured point clouds representing the topographic layer and the fault. The *.pl file (Gocad ASCII File format) describes 2 manually set curves used for defining the model extend.

## Triangulating structured point clouds¶

First, we construct triangulated surfaces from the structured point clouds using createGOCADTSurfNXNY.py
python createGOCADTSurfNXNY.py --NX 161 topography.dat topography.ts
If the points of the cloud share the same coordinates along a row or a column, then the -NX option can be omitted
python createGOCADTSurfNXNY.py ScecRoughFault.dat fault.ts

Now let’s combine all these data into a CAD model using GOCAD.
Launch Gocad and create a new project. Use the default modules. Change Depth to meters, and Depth axis to Upwards. Don’t specify the coordinates system. Projecting is done using the python scripts. When creating the surfaces, many scripts have a “–proj” option. In addition, the script projTs.py also allows projecting gocad ts files. Using projected data in Gocad (as opposed to lat/lon/depth data) seems to help the software generating high-quality intersections.
File > Import > Gocad Objects and select the two surfaces (fault.ts and topography.ts) and the *.pl file.

### Creating the bottom and sides surfaces¶

Surface > New > Closed Curved, choose a name, uncheck ‘Dissociate vertices’ in advance (always do that), click on apply and click on the curve ‘bottom’.
Surface > New > Builds in Forms/Tube, choose an name, curve ‘bottom’, dir expansion along z 80e3, number of level 8(for example), uncheck ‘Dissociate vertices’.

### Mutual intersections¶

Tools > cut > mutual cut among surfaces > select side surface, fault and topography. Tools > Part > delete selection: click on the portion of the fault surface higher than the topography. Then on the part of the side surface higher than the topography.

### Alternative way of Creating the side surface¶

Sometimes the mutual intersection of Gocad does not work properly (in particular when the intersection curve passes close to triangle edges on both surfaces). Then the surfaces to be intersected have to be manually adjusted, for example by switching triangles (Tools > Triangle > Switch 2 triangles), to allow the intersection to work properly. Alternatively, a different way of generating the surface could be considered. For instance, the side surfaces can be generated from the 2 curves bordering the topography and the bottom surface:
Curve > New > Borders > all, use surface topography to create curve ctopo. Surface > New > 2 curves parts > select a name, choose a number of level (e.g. 4) and click on both curves.
Here is the resulting model:

### A third option for creating the side surface¶

If a projection has been already done on the topography surface, then the borders of the surface are probably not any more straights, and the previous method may not be applicable anymore. In such a situation, we can still create a tube from the border of the topography, and cut it at the required depth. Curve > New > Borders > all, use surface topography to create curve ctopo.
Surface > New > Builds in Forms/Tube, choose an name, curve ‘ctopo’, dir expansion along z -80e3, number of level 8(for example), uncheck ‘Dissociate vertices’.
To trim the tube at the requested depth, we export the curve ctopo in a pl file (File > Export > Gocad ASCII >ctopo.pl) and we use the script ChangeDepthPl.py:
python ChangeDepthPl.py ctopo.pl ctopo_new.pl --depth 60e3
Then we import ctopo_new.pl into the project, create the bottom surface of the box from it (using Surface > New > Closed Curved). We can then intersected this new surface with the tube, and remove the part of the tube below the bottom box surface.

## Exporting and converting to stl¶

Now the triangulation of all surfaces of the CAD model is conforming, and we can export the CAD surface in a ts format.

File > Export > Gocad ASCII > choose a filename (example test.ts).
Now let’s convert the ts file to stl using convertTs2Stl.py:
convertTs2Stl.py test.ts
The –merged option merges all surfaces in a single stl ‘solid’. If not set, each Gocad surface will be isolated into a different stl ‘solid’. Each surface will then be viewed as a different entity by SimModeler.
The option –proj allows projecting into a new coordinate system (e.g. –proj EPSG:32646).

## Sanity check¶

File > Import Discrete Data > select file and click on OK.
In Model list, we have a single region and no singled-out surfaces.
Model Tab > Remove Small Features: Shortest edge in the model should be big in comparison to your smallest mesh size. If not, you can specify a tolerance and have a look at the location of the small features. If they are located in the vicinity of some surface mutual intersection made with Gocad, this stage failed and you have to go back working on your CAD model, for example following this guide: [[Manually fixing an intersection in Gocad]].
If everything was fine in the previous checks proposed, we can make a last verification by meshing coarsely the model using
Meshing > Generate mesh. We can finally inspect the mesh:
Display tab > check Mesh Stats > then check Aspect Ratio, and see if the maximum aspect ratio has a reasonable value (~20).